Resources

Datasets and interactive apps from our publications.

Resources
Evo-devo mammalian organs

Evo-devo mammalian organs

This Shiny app allows the interactive exploration of individual gene expression profiles across organs, developmental stages and species.

From the publication:

Cardoso-Moreira, M. et al. Gene expression across mammalian organ development. Nature (2019)
https://www.nature.com/articles/s41586-019-1338-5

Evo-devo mammalian lncRNAs

Evo-devo mammalian lncRNAs

This Shiny app allows the interactive exploration of lncRNA summary statistics, gene models and expression profiles across mammalian organs, developmental stages and species.

From the publication:

Sarropoulos, I. et al. Developmental dynamics of lncRNAs across mammalian organs and species. Nature (2019)
https://www.nature.com/articles/s41586-019-1341-x

Evo-devo Alternative splicing

Evo-devo Alternative splicing

This Shiny app allows the interactive exploration of alternative splicing patterns across mammalian organs, developmental stages and species.

From the publication:

Mazin, P.V. et al. Alternative splicing during mammalian organ development. Nat. Genet. (2021)
https://www.nature.com/articles/s41588-021-00851-w

Ex2plorer

Ex2plorer

From the publication:

Wang, Z.Y., Leushkin, E. et al. Transcriptome and translatome co-evolution in mammals. Nature (2020)
https://www.nature.com/articles/s41586-020-2899-z

The molecular evolution of spermatogenesis across mammals

The molecular evolution of spermatogenesis across mammals

This Shiny app allows the interactive exploration of individual gene expression profiles of adult testis across ten mammalian species and a bird at the single-cell resolution.

From the publication:

Murat F., Mbengue N. et al. The molecular evolution of spermatogenesis across mammals (2021)
https://www.nature.com/articles/s41586-022-05547-7

Lamprey brain atlas

Lamprey brain atlas

A comprehensive single-cell atlas of the sea-lamprey (Petromyzon marinus) brain.

From the publication:

Lamanna, F., Hervas-Sotomayor, F. et al. Reconstructing the ancestral vertebrate brain using a lamprey neural cell type atlas (2022)
https://www.biorxiv.org/content/10.1101/2022.02.28.482278v1

Cellular development and evolution of the mammalian cerebellum

Cellular development and evolution of the mammalian cerebellum

Explore the single nucleus RNA sequencing atlases of the human, mouse and opossum cerebellum, by Kaessmann Lab and Pfister Lab ( Datacommons ).

From the publication:

Sepp, M., Kevin, L. et al. Cellular development and evolution of the mammalian cerebellum. Nature (2023)
https://www.nature.com/articles/s41586-023-06884-x

Developing mouse cerebellum snATAC-seq atlas

Developing mouse cerebellum snATAC-seq atlas

This app allows the exploration of cis-regulatory elements (CREs) active in the developing mouse cerebellum.

From the publication:

Sarropoulos, I., Sepp M. et al. Developmental and evolutionary dynamics of cis-regulatory elements in mouse cerebellar cells. Science (2021)
https://www.science.org/doi/10.1126/science.abg4696